Difference between revisions of "Hochauflösende Kameraeinrichtung mit softwaregesteuert bewegbarem Tisch optimiert für dreidimensionale Makroobjekte (Kleinpilze) und hohe Schärfentiefe"

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(Contact person(s))
(Digitizing workflow)
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=== Digitizing workflow ===
 
=== Digitizing workflow ===
 
* The object to be digitized is placed on the electric table.
 
* The object to be digitized is placed on the electric table.
* Up to 24 single photographs are automatically taken by the Elub 0781 software thereby slightly changing the focus settings after each shot according to predefined parameters. This procedure takes about 10 minutes.
+
* Up to 30 single photographs are automatically taken by the Elub 0781 software thereby slightly changing the focus settings after each shot according to predefined parameters. This procedure takes about 10 minutes.
 
* The single shots (RAW files) are further processed to one new image applying superresolution and focus stacking technologies provided by PhotoAcute, which takes about 20 minutes.
 
* The single shots (RAW files) are further processed to one new image applying superresolution and focus stacking technologies provided by PhotoAcute, which takes about 20 minutes.
 
* The resulting artificial image contains only that parts of the underlying single shots, which are in focus (focus stacking), and its resolution is enhanced approximately fourfold (superresolution).
 
* The resulting artificial image contains only that parts of the underlying single shots, which are in focus (focus stacking), and its resolution is enhanced approximately fourfold (superresolution).

Revision as of 15:12, 16 March 2015

High-resolution camera system with software-controlled movable table optimized for three-dimensional macro objects (small fungi) and high depth of field

High Resolution Camera System Sample Scanner 2014-04-10.jpg High Resolution Camera System Example 2013-09-26.jpg High Resolution Camera System Example2 2013-09-27.jpg

Camera hardware

  • DSLR: Nikon D2X (12.5 Megapixel)
  • Macro lens: Micro Nikkor 60 mm 1:2.8 D

Lighting

  • 2 x F&V 5600K-3200K Bi-color Flood K4000s LED Studio Light Panel (diffusor filter)
  • 1 x CN-126 LED Video Lighting (5400 K, 650 lx, diffusor filter)

Digitization workstation - hardware and software

Computer hardware:

  • Intel Core i7-870 CPU (8M Cache, 2.93 GHz)
  • 8 GB RAM
  • 2 x Western Digital WD5002ABYS-02B1B0 (500 GB, SATA2) RAID 0 HDD
  • NVIDIA Quadro 2000 graphics card (1 GB DDR5 frame buffer)
  • QUATO Intelli Proof 242 ex 24" proof monitor
  • Handheld barcode scanner (USB)

Electric sample table (XYZ-Sample-Scanner):

  • Software-controlled table (custom product by P. Reiß, Elektronikwerkstatt Universität Bayreut), automatically adjustable in three dimensions with micrometre precision by means of electrical stepping motors

Software:

  • Windows 7 Ultimate 64 Bit
  • Nikon Camera Control Pro 1.3.0
  • Elub 0781 2.1 control software (custom product by P. Reiß, Elektronikwerkstatt Universität Bayreuth)
  • PhotoAcute 3
  • Adobe Photoshop 12.0.4

Digitizing server infrastructure

Storage server for images, image web publication server, web server, database server - at the SNSB IT Center

Digitizing workflow

  • The object to be digitized is placed on the electric table.
  • Up to 30 single photographs are automatically taken by the Elub 0781 software thereby slightly changing the focus settings after each shot according to predefined parameters. This procedure takes about 10 minutes.
  • The single shots (RAW files) are further processed to one new image applying superresolution and focus stacking technologies provided by PhotoAcute, which takes about 20 minutes.
  • The resulting artificial image contains only that parts of the underlying single shots, which are in focus (focus stacking), and its resolution is enhanced approximately fourfold (superresolution).
  • In Photoshop, this final raw image file is color-adjusted, cropped, and exported as TIFF, which takes about 5 minutes.
  • Single shot raw files, combined raw file, and TIFFs are stored at the Leibniz Rechenzentrum München.

Contact person(s)

Sebastian Werner

Dr. Tobias Lehmann

Dr. Konstanze Bensch

Publication

  • Werner, S., Bensch, K., Beck, A., Neubacher, D., Reichert, W., Reiß, P. & Triebel, D. 2014. Multi-layered digitization of research-relevant objects using focus stacking technologies and a software-controlled movable table. – In: Mallison, H., Vogel, J. & Belvedere, M. (eds.): Digital Specimen 2014 – Abstracts of Presentations. Museum für Naturkunde Berlin. – Abstract and Poster.